HPC Training Series - Course 14 "Biosciences using High Performance Computing (HPC) Systems"
Thursday, 19 June 2025 -
10:00
Monday, 16 June 2025
Tuesday, 17 June 2025
Wednesday, 18 June 2025
Thursday, 19 June 2025
10:00
Introduction to EuroCC & the training events
-
Lena Kanellou
(Senior Researcher, EuroCC@Greece/Institute of Computer Science of the Foundation for Research and Technology, Hellas (ICS-FORTH))
Introduction to EuroCC & the training events
Lena Kanellou
(Senior Researcher, EuroCC@Greece/Institute of Computer Science of the Foundation for Research and Technology, Hellas (ICS-FORTH))
10:00 - 10:15
10:15
Introduction to AUTH’s HPC infrastructure “Aristotelis” and short demo
-
Alexandra Charampidou
(HPC engineer, Aristotle University of Thessaloniki )
Introduction to AUTH’s HPC infrastructure “Aristotelis” and short demo
Alexandra Charampidou
(HPC engineer, Aristotle University of Thessaloniki )
10:15 - 10:45
10:45
HPC in biomarker and drug target discovery
-
Nikolaos Dovrolis
(Senior Researcher, Department of Medicine, Democritus University of Thrace)
HPC in biomarker and drug target discovery
Nikolaos Dovrolis
(Senior Researcher, Department of Medicine, Democritus University of Thrace)
10:45 - 11:15
11:15
Break
Break
11:15 - 11:30
11:30
Scalable and Performant Applications for Biomolecular Research: Efficient use of HPC and Cloud
-
Rossen Apostolov
(Director of BioExcel, a Centre of Excellence for Computational Biomolecular Research)
Scalable and Performant Applications for Biomolecular Research: Efficient use of HPC and Cloud
Rossen Apostolov
(Director of BioExcel, a Centre of Excellence for Computational Biomolecular Research)
11:30 - 12:00
12:00
Introduction to Population (epi-)Genomics- demo on Aristotelis HPC infrastructure
-
Konstantinos Sagonas
(Assistant Professor, School of Biology, Aristotle University of Thessaloniki )
Introduction to Population (epi-)Genomics- demo on Aristotelis HPC infrastructure
Konstantinos Sagonas
(Assistant Professor, School of Biology, Aristotle University of Thessaloniki )
12:00 - 12:45
12:45
Break
Break
12:45 - 13:00
13:00
Introduction to RNA-seq Analysis: Basic Concepts in Gene Expression- demo on Aristotelis HPC infrastructure
-
Korina Karagianni
(Ph.D. Candidate, School of Biology, Aristotle University of Thessaloniki)
Introduction to RNA-seq Analysis: Basic Concepts in Gene Expression- demo on Aristotelis HPC infrastructure
Korina Karagianni
(Ph.D. Candidate, School of Biology, Aristotle University of Thessaloniki)
13:00 - 13:45
13:45
Bespoke comparative genomics software architectures: a case-study for future HPC on Aristotelis
-
Christos Ouzounis
(Professor of Bioinformatics, School of Informatics, Aristotle University of Thessaloniki )
Bespoke comparative genomics software architectures: a case-study for future HPC on Aristotelis
Christos Ouzounis
(Professor of Bioinformatics, School of Informatics, Aristotle University of Thessaloniki )
13:45 - 14:30
14:30
Questions / Open discussion
Questions / Open discussion
14:30 - 14:45